pl.modisco

Visualize results of the modisco pipeline.

Functions

class_instances(pattern_dict, idx[, ...])	Plot instances of a specific pattern, either the representative pattern per class or all instances for a given pattern index.
clustermap(pattern_matrix, classes[, ...])	Create a clustermap from the given pattern matrix and class labels with customizable options.
clustermap_tf_motif(data[, heatmap_dim, ...])	Generate a heatmap where one modality is represented as color, and the other as dot size.
clustermap_tomtom_similarities(sim_matrix, ...)	Create a Seaborn clustermap of TOMTOM similarity scores with optional PWM logo display and filtering.
clustermap_with_pwm_logos(pattern_matrix, ...)	Create a clustermap with additional PWM logo plots below the heatmap.
modisco_results(classes, contribution, ...)	Plot genomic contributions for the given classes.
selected_instances(pattern_dict, idcs[, ax])	Plot the patterns specified by the indices in idcs from the pattern_dict.
similarity_heatmap(similarity_matrix, indices)	Plot a similarity heatmap of all pattern indices.
tf_expression_per_cell_type(df, tf_list[, ...])	Plot the expression levels of specified transcription factors (TFs) per cell type.